fragr

Overview

fragr is an R package explicitly for wrangling capillary electrophoresis data that has been called in and exported from PeakScanner.

• read_PeakScanner() imports csv-format PeakScanner combined table files into a list
• subfix() repairs instances where the substrate peak is called twice (or more) from shoulders
• prodify() frames relative peak area in terms of product peak area only
• act_specific() defines specific activity
• act_offsense() defines all other activity on the same strand
• act_offanti() for two-dye experiments, defines activity on the opposite strand

Installation

You can install the development version from GitHub with:

# install.packages("devtools")
# devtools::install_github("eric-hunt/fragr")
install.packages("fragr", repos = c('https://eric-hunt.r-universe.dev', 'https://cloud.r-project.org'))