Package: htce 0.1.0
htce: A set of internal tools for managing high-throughput assay data at NEB
What the package does (one paragraph).
Authors:
htce_0.1.0.tar.gz
htce_0.1.0.zip(r-4.7)htce_0.1.0.zip(r-4.6)htce_0.1.0.zip(r-4.5)
htce_0.1.0.tgz(r-4.6-any)htce_0.1.0.tgz(r-4.5-any)
htce_0.1.0.tar.gz(r-4.7-any)htce_0.1.0.tar.gz(r-4.6-any)
htce_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
htce/json (API)
| # Install 'htce' in R: |
| install.packages('htce', repos = c('https://eric-hunt.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/eric-hunt/htce/issues
Last updated from:92ab8341be. Checks:7 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | WARNING | 100 | ||
| source / vignettes | OK | 204 | ||
| linux-release-x86_64 | WARNING | 107 | ||
| macos-release-arm64 | WARNING | 100 | ||
| macos-oldrel-arm64 | WARNING | 90 | ||
| windows-devel | WARNING | 55 | ||
| windows-release | WARNING | 73 | ||
| windows-oldrel | WARNING | 72 | ||
| wasm-release | OK | 92 |
Exports:address_to_well_idbarcode_to_plate_idcount_newlinesdkdb_collectdkdb_executedkdb_lookupexisting_barcodesfatools_matrixfind_skipsmake_submission_filesmake_well_ordernew_fatools_matrixtidyvalidate_fatools_matrixwith_duckdb_connection
Dependencies:assertthatclidata.tableDBIduckdbgenericsgluelifecyclemagrittrpillarpkgconfigrlangtibbleutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Retrieve a well_id from barcode and address strings | address_to_well_id |
| Retrieve a plate_id from a barcode string | barcode_to_plate_id |
| Return the number of lines in a file | count_newlines |
| DuckDB Query | db_query dkdb_collect dkdb_execute |
| Lookup something by a set of attributes and return the 'id' or a Boolean value indicating if it already exists | dkdb_lookup |
| Title | existing_barcodes |
| Title | fatools_matrix |
| Find and return skip values | find_skips |
| Create CE submission files | make_submission_files |
| Create a vector of well addresses | make_well_order |
| Title | new_fatools_matrix |
| Title | tidy.fatools_matrix |
| Title | validate_fatools_matrix |
| DuckDB Connection | with_duckdb_connection |
